Brylinski, Michał: search on Z-Library

The world's largest scientific articles store. 70,000,000+ articles for free.

Don't use scam websites

1

Is the growth rate of Protein Data Bank sufficient to solve the protein structure prediction problem using template-based modeling?

Brylinski, Michal

Journal:

Bio-Algorithms and Med-Systems

Year:

2015

Language:

english

File:

PDF, 640 KB

english, 2015

2

[WORLD SCIENTIFIC From Quantum Information to Bio-Informatics - Tokyo University of Science, Japan (11 – 14 March 2009)] Quantum Bio-Informatics III - NOVEL COMPUTATIONAL APPROACHES TO DRUG DISCOVERY

SKOLNICK, JEFFREY, BRYLINSKI, MICHAL

Language:

english

File:

PDF, 1.66 MB

english

3

Q-Dock: Low-resolution flexible ligand docking with pocket-specific threading restraints

Michal Brylinski, Jeffrey Skolnick

Journal:

Journal of Computational Chemistry

Year:

2008

Language:

english

File:

PDF, 628 KB

english, 2008

4

Q-DockLHM: Low-resolution refinement for ligand comparative modeling

Michal Brylinski, Jeffrey Skolnick

Journal:

Journal of Computational Chemistry

Year:

2010

Language:

english

File:

PDF, 560 KB

english, 2010

5

Hydrophobic collapse in (in silico) protein folding

Michal Brylinski, Leszek Konieczny, Irena Roterman

Journal:

Computational Biology and Chemistry

Year:

2006

Language:

english

File:

PDF, 1.38 MB

english, 2006

6

Conservative secondary structure motifs already present in early-stage folding (in silico) as found in serpines family

Michal Brylinski, Leszek Konieczny, Andrzej Kononowicz, Irena Roterman

Journal:

Journal of Theoretical Biology

Year:

2008

Language:

english

File:

PDF, 1.12 MB

english, 2008

7

Conformational subspace in simulation of early-stage protein folding

Wiktor Jurkowski, Michał Brylinski, Leszek Konieczny, Zdzisław Wiíniowski, Irena Roterman

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2004

Language:

english

File:

PDF, 830 KB

english, 2004

8

What is the relationship between the global structures of apo and holo proteins?

Michal Brylinski, Jeffrey Skolnick

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2008

Language:

english

File:

PDF, 671 KB

english, 2008

9

Comparison of structure-based and threading-based approaches to protein functional annotation

Michal Brylinski, Jeffrey Skolnick

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2010

Language:

english

File:

PDF, 646 KB

english, 2010

10

FINDSITE-metal: Integrating evolutionary information and machine learning for structure-based metal-binding site prediction at the proteome level

Michal Brylinski, Jeffrey Skolnick

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2011

Language:

english

File:

PDF, 990 KB

english, 2011

11

Localization of ligand binding site in proteins identifiedin silico

Michal Brylinski, Marek Kochanczyk, Elzbieta Broniatowska, Irena Roterman

Journal:

Journal of Molecular Modeling

Year:

2007

Language:

english

File:

PDF, 794 KB

english, 2007

12

Stereoselectivity of 8-OH-DPAT toward the serotonin 5-HT1A receptor: Biochemical and molecular modeling study

Joanna Dabrowska, Michal Brylinski

Journal:

Biochemical Pharmacology

Year:

2006

Language:

english

File:

PDF, 656 KB

english, 2006

13

Cross-Reactivity Virtual Profiling of the Human Kinome by X-ReactKIN: A Chemical Systems Biology Approach

Brylinski, Michal, Skolnick, Jeffrey

Journal:

Molecular Pharmaceutics

Year:

2010

Language:

english

File:

PDF, 4.94 MB

english, 2010

14

Hydrophobic collapse in late-stage folding (in silico) of bovine pancreatic trypsin inhibitor

Michal Brylinski, Leszek Konieczny, Irena Roterman

Journal:

Year:

2006

Language:

english

File:

PDF, 525 KB

english, 2006

15

The utility of geometrical and chemical restraint information extracted from predicted ligand-binding sites in protein structure refinement

Michal Brylinski, Seung Yup Lee, Hongyi Zhou, Jeffrey Skolnick

Journal:

Journal of Structural Biology

Year:

2011

Language:

english

File:

PDF, 1.22 MB

english, 2011

16

eFindSite: Improved prediction of ligand binding sites in protein models using meta-threading, machine learning and auxiliary ligands

Michal Brylinski, Wei P. Feinstein

Journal:

Journal of Computer-Aided Molecular Design

Year:

2013

Language:

english

File:

PDF, 1.02 MB

english, 2013

17

eVolver: an optimization engine for evolving protein sequences to stabilize the respective structures

Michal Brylinski

Journal:

BMC Research Notes

Year:

2013

Language:

english

File:

PDF, 522 KB

english, 2013

18

Nonlinear Scoring Functions for Similarity-Based Ligand Docking and Binding Affinity Prediction

Brylinski, Michal

Journal:

Journal of Chemical Information and Modeling

Year:

2013

Language:

english

File:

PDF, 3.96 MB

english, 2013

19

Exploring the “dark matter” of a mammalian proteome by protein structure and function modeling

Brylinski, Michal

Journal:

Proteome Science

Year:

2013

Language:

english

File:

PDF, 1.27 MB

english, 2013

20

THE EMPLOYMENT OF A SPECIAL PATHOLOGIST BY A CORONER.

Brylinski, Michal

Journal:

Year:

1906

Language:

english

File:

PDF, 371 KB

english, 1906

21

The utility of artificially evolved sequences in protein threading and fold recognition

Brylinski, Michal

Journal:

Journal of Theoretical Biology

Year:

2013

Language:

english

File:

PDF, 1.82 MB

english, 2013

22

Guidelines for disk submission

Brylinski, Michal

Journal:

NDT & E International

Year:

1993

Language:

english

File:

PDF, 92 KB

english, 1993

23

Further Evidence for the Likely Completeness of the Library of Solved Single Domain Protein Structures

Skolnick, Jeffrey, Zhou, Hongyi, Brylinski, Michal

Journal:

Journal of Physical Chemistry B

Year:

2012

Language:

english

File:

PDF, 2.01 MB

english, 2012

24

Comprehensive Structural and Functional Characterization of the Human Kinome by Protein Structure Modeling and Ligand Virtual Screening

Brylinski, Michal, Skolnick, Jeffrey

Journal:

Journal of Chemical Information and Modeling

Year:

2010

Language:

english

File:

PDF, 7.23 MB

english, 2010

25

Why not consider a spherical protein? Implications of backbone hydrogen bonding for protein structure and function

Brylinski, Michal, Gao, Mu, Skolnick, Jeffrey

Journal:

Physical Chemistry Chemical Physics

Year:

2011

Language:

english

File:

PDF, 3.21 MB

english, 2011

26

Fuzzy-Oil-Drop Hydrophobic Force Field—A Model to Represent Late-stage Folding (In Silico ) of Lysozyme

Brylinski, Michal, Konieczny, Leszek, Roterman, Irena

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2006

Language:

english

File:

PDF, 967 KB

english, 2006

27

Use of protein cross-linking and radiolytic footprinting to elucidate PsbP and PsbQ interactions within higher plant Photosystem II

Mummadisetti, Manjula P., Frankel, Laurie K., Bellamy, Henry D., Sallans, Larry, Goettert, Jost S., Brylinski, Michal, Limbach, Patrick A., Bricker, Terry M.

Journal:

Proceedings of the National Academy of Sciences

Year:

2014

Language:

english

File:

PDF, 1.10 MB

english, 2014

28

e FindSite: Enhanced Fingerprint-Based Virtual Screening Against Predicted Ligand Binding Sites in Protein Models

Feinstein, Wei P., Brylinski, Michal

Journal:

Molecular Informatics

Year:

2014

Language:

english

File:

PDF, 1.64 MB

english, 2014

29

Calculating an optimal box size for ligand docking and virtual screening against experimental and predicted binding pockets

Feinstein, Wei P., Brylinski, Michal

Journal:

Journal of Cheminformatics

Year:

2015

Language:

english

File:

PDF, 5.86 MB

english, 2015

30

Developing eThread Pipeline Using SAGA-Pilot Abstraction for Large-Scale Structural Bioinformatics

Ragothaman, Anjani, Boddu, Sairam Chowdary, Kim, Nayong, Feinstein, Wei, Brylinski, Michal, Jha, Shantenu, Kim, Joohyun

Journal:

BioMed Research International

Year:

2014

Language:

english

File:

PDF, 1.42 MB

english, 2014

31

FINDSITELHM: A Threading-Based Approach to Ligand Homology Modeling

Brylinski, Michal, Skolnick, Jeffrey, Levitt, Michael

Journal:

PLoS Computational Biology

Year:

2009

Language:

english

File:

PDF, 3.80 MB

english, 2009

32

eMatchSite: Sequence Order-Independent Structure Alignments of Ligand Binding Pockets in Protein Models

Brylinski, Michal, Prlic, Andreas

Journal:

PLoS Computational Biology

Year:

2014

Language:

english

File:

PDF, 2.96 MB

english, 2014

33

Prediction of Functional Sites Based on the Fuzzy Oil Drop Model

Bryliński, Michał, Prymula, Katarzyna, Jurkowski, Wiktor, Kochańczyk, Marek, Stawowczyk, Ewa, Konieczny, Leszek, Roterman, Irena

Journal:

PLoS Computational Biology

Year:

2007

Language:

english

File:

PDF, 683 KB

english, 2007

34

PDID: Database of molecular-level putative protein-drug interactions in the structural human proteome

Wang, Chen, Hu, Gang, Wang, Kui, Brylinski, Michal, Xie, Lei, Kurgan, Lukasz

Journal:

Year:

2015

Language:

english

File:

PDF, 452 KB

english, 2015

35

Template-based identification of protein–protein interfaces using eFindSitePPI

Maheshwari, Surabhi, Brylinski, Michal

Journal:

Year:

2015

Language:

english

File:

PDF, 1.51 MB

english, 2015

36

Deletion of a Predicted β-sheet Domain within the Amino-terminus of Herpes Simplex Virus Glycoprotein K (gK) Conserved among Alphaherpesviruses Prevents Virus Entry into Neuronal Axons

Jambunathan, Nithya, Charles, Anu-Susan, Subramanian, Ramesh, Saied, Ahmad A., Naderi, Misagh, Rider, Paul, Brylinski, Michal, Chouljenko, Vladimir N., Kousoulas, Konstantin. G.

Journal:

Journal of Virology

Year:

2015

Language:

english

File:

PDF, 1.40 MB

english, 2015

37

Is the protein folding an aim-oriented process? Human haemoglobin as example

Brylinski, Michal, Konieczny, Leszek, Roterman, Irena

Journal:

International Journal of Bioinformatics Research and Applications

Year:

2007

Language:

english

File:

PDF, 3.90 MB

english, 2007

38

Use of Protein Crosslinking and Radiolytic Labeling to Elucidate the Structure of PsbO within Higher Plant Photosystem II

Mummadisetti, Manjula P., Frankel, Laurie K., Bellamy, Henry D., Sallans, Larry, Goettert, Jost S., Brylinski, Michal, Bricker, Terry M.

Journal:

Year:

2016

Language:

english

File:

PDF, 2.44 MB

english, 2016

39

Predicted binding site information improves model ranking in protein docking using experimental and computer-generated target structures

Maheshwari, Surabhi, Brylinski, Michal

Journal:

BMC Structural Biology

Year:

2015

Language:

english

File:

PDF, 3.43 MB

english, 2015

40

A graph-based approach to construct target-focused libraries for virtual screening

Naderi, Misagh, Alvin, Chris, Ding, Yun, Mukhopadhyay, Supratik, Brylinski, Michal

Journal:

Journal of Cheminformatics

Year:

2016

Language:

english

File:

PDF, 2.53 MB

english, 2016

41

GeauxDock: A novel approach for mixed-resolution ligand docking using a descriptor-based force field

Ding, Yun, Fang, Ye, Feinstein, Wei P., Ramanujam, Jagannathan, Koppelman, David M., Moreno, Juana, Brylinski, Michal, Jarrell, Mark

Journal:

Journal of Computational Chemistry

Year:

2015

Language:

english

File:

PDF, 1.01 MB

english, 2015

42

Prediction of protein-protein interaction sites from weakly homologous template structures using meta-threading and machine learning

Maheshwari, Surabhi, Brylinski, Michal

Journal:

Journal of Molecular Recognition

Year:

2015

Language:

english

File:

PDF, 3.23 MB

english, 2015

43

Herpes Simplex Virus Type 1 UL37 Protein Tyrosine Residues Conserved among all Alphaherpesviruses are Required for Interactions with Glycoprotein K (gK), Cytoplasmic Virion Envelopment, and Infectious Virus Production

Chouljenko, Dmitry V., Jambunathan, Nithya, Chouljenko, V. N., Naderi, Misagh, Brylinski, Michal, Caskey, John R., Kousoulas, K. G.

Journal:

Journal of Virology

Year:

2016

Language:

english

File:

PDF, 3.58 MB

english, 2016

44

Assessing the similarity of ligand binding conformations with the Contact Mode Score

Ding, Yun, Fang, Ye, Moreno, Juana, Ramanujam, J., Jarrell, Mark, Brylinski, Michal

Journal:

Computational Biology and Chemistry

Year:

2016

Language:

english

File:

PDF, 2.20 MB

english, 2016

45

Break Down in Order To Build Up: Decomposing Small Molecules for Fragment-Based Drug Design with e MolFrag

Liu, Tairan, Naderi, Misagh, Alvin, Chris, Mukhopadhyay, Supratik, Brylinski, Michal

Journal:

Journal of Chemical Information and Modeling

Year:

2017

Language:

english

File:

PDF, 912 KB

english, 2017

46

Aromatic interactions at the ligand-protein interface: Implications for the development of docking scoring functions

Brylinski, Michal

Journal:

Chemical Biology & Drug Design

Year:

2017

Language:

english

File:

PDF, 1.73 MB

english, 2017

47

e Repo-ORP: Exploring the Opportunity Space to Combat Orphan Diseases with Existing Drugs

Brylinski, Michal, Naderi, Misagh, Govindaraj, Rajiv Gandhi, Lemoine, Jeffrey

Journal:

Journal of Molecular Biology

Year:

2017

Language:

english

File:

PDF, 1.29 MB

english, 2017

48

Cysteines and N-Glycosylation Sites Conserved among All Alphaherpesviruses Regulate Membrane Fusion in Herpes Simplex Virus 1 Infection

Rider, Paul J. F., Naderi, Misagh, Bergeron, Scott, Chouljenko, Vladimir N., Brylinski, Michal, Kousoulas, Konstantin G., Longnecker, Richard M.

Journal:

Journal of Virology

Year:

2017

Language:

english

File:

PDF, 2.53 MB

english, 2017

49

Large-scale computational drug repositioning to find treatments for rare diseases

Govindaraj, Rajiv Gandhi, Naderi, Misagh, Singha, Manali, Lemoine, Jeffrey, Brylinski, Michal

Journal:

npj Systems Biology and Applications

Year:

2018

Language:

english

File:

PDF, 2.20 MB

english, 2018

50

Comparative assessment of strategies to identify similar ligand-binding pockets in proteins

Govindaraj, Rajiv Gandhi, Brylinski, Michal

Journal:

BMC Bioinformatics

Year:

2018

Language:

english

File:

PDF, 3.02 MB

english, 2018

To build up a library is to create a life. It’s never just a random collection of books.

— Carlos María Domínguez

Official channel

Z-Library Desktop Launcher

Z-Library Since 2009 support@z-lib.do

EnglishРусскийEspañolItalianoελληνικάاللغة العربيةBahasa IndonesiaBahasa Malaysiaहिन्दीDeutschFrançaisPortuguêsУкраїнськаPolski中文繁體中文日本語Tiếng ViệtAzərbaycan DiliՀայոց լեզուภาษาไทยTürk Diliქართველიবাংলাپښتوతెలుగుاردو한국어SrpskiБългарски